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mos-service-deploy
colabfold2
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3a684072
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3a684072
authored
3 years ago
by
Sergey O
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3 years ago
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@@ -7,13 +7,13 @@ Making Protein folding accessible to all via Google Colab!
Official Notebook from Deepmind:
-
[
AlphaFold2
](
https://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb
)
-
`monomers=Yes, homoligomers=No, mmseqs2=No, jackhmmer=Yes, templates=No`
Maximum length limits depends on free GPU
Maximum length limits depends on free GPU
provided by Google-Colab
`fingers-crossed`
-
For GPU:
`Tesla T4`
or
`Tesla P100`
with ~16G the max length is ~1400
-
For GPU:
`Tesla K80`
with ~12G the max length is ~1000
-
To check what GPU you got, open a new code cell and type
`!nvidia-smi`
OLD Experimental notebooks:
-
[
RoseTTAFold
](
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/RoseTTAFold.ipynb
)
- Work in Progress
...
-
[
RoseTTAFold
](
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/RoseTTAFold.ipynb
)
-
`
Work in Progress
`
-
[
AlphaFold2_noTemplates_noMD
](
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/verbose/alphafold_noTemplates_noMD.ipynb
)
-
[
AlphaFold2_noTemplates_yesMD
](
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/verbose/alphafold_noTemplates_yesMD.ipynb
)
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