Commits · 2aea88d0fe6b97ab74d0107b1ad654951f65884b · mos-service-deploy / colabfold2

13 Jun, 2022 4 commits
- Update colab-alphafold version · 2aea88d0
  Martin Steinegger authored 3 years ago
  
  2aea88d0
- Fix msa_max issue · c03e440b
  Martin Steinegger authored 3 years ago
  
  c03e440b
- Add max_msa support · 021dfca3
  Martin Steinegger authored 3 years ago
  
  021dfca3
- Fix test and run black · 73b94b87
  Martin Steinegger authored 3 years ago
  
  73b94b87
09 Jun, 2022 5 commits
- removing extra imported unused function · 1c9b0569
  Sergey O authored 3 years ago
  
  1c9b0569
- decreasing dpi for images pseudo_2D_plots · 0dba7505
  Sergey O authored 3 years ago
  
  0dba7505
- fixing hardcoded dpi for plot_plddts · 60caa02b
  Sergey O authored 3 years ago
  
  60caa02b
- adding option to specify dpi · c915802b
  Sergey O authored 3 years ago
  
  c915802b
- adding option to update dpi · ee432b9e
  Sergey O authored 3 years ago
  
  ee432b9e
08 Jun, 2022 1 commit
- changing to always print ptmscore (if complex or ptm model is used) · 9764afc9
  Sergey O authored 3 years ago
  
  9764afc9
01 Jun, 2022 4 commits
- updating notebook to use latest version of jax (otherwise it does not work... · e3b219cc
  Sergey O authored 3 years ago
```
updating notebook to use latest version of jax (otherwise it does not work with A100, and colab pro+ )
```
  e3b219cc
- adding link to pyrosetta version · 52342bf3
  Sergey O authored 3 years ago
  
  52342bf3
- fixing torch version · a2b284b9
  Sergey O authored 3 years ago
  
  a2b284b9
- updating version of torch · b4a54568
  Sergey O authored 3 years ago
  
  b4a54568
31 May, 2022 9 commits
- Add citation · 7227d4c9
  Martin Steinegger authored 3 years ago
  
  7227d4c9
- Update citation · 507c3b39
  Martin Steinegger authored 3 years ago
  
  507c3b39
- Update citations.py · fafa47bc
  Martin Steinegger authored 3 years ago
  
  fafa47bc
- Update README.md · ab699033
  Martin Steinegger authored 3 years ago
  
  ab699033
- Created using Colaboratory · e2102210
  Martin Steinegger authored 3 years ago
  
  e2102210
- Update text · be31d344
  Martin Steinegger authored 3 years ago
  
  be31d344
- Update citation · 3668a025
  Martin Steinegger authored 3 years ago
  
  3668a025
- Update README.md · 947d808b
  Martin Steinegger authored 3 years ago
  
  947d808b
- Change citation · fc61a469
  Martin Steinegger authored 3 years ago
  
  fc61a469
13 May, 2022 2 commits
- Forgot black · 03b9a6ad
  Milot Mirdita authored 3 years ago
  
  03b9a6ad
- Expose --random-seed in colabfold_batch (#227) · a4dd6b83
  Milot Mirdita authored 3 years ago
  
  a4dd6b83
12 May, 2022 1 commit
- Update tests to work with previous lazy loading changes · 4b86ef10
  Milot Mirdita authored 3 years ago
  
  4b86ef10
11 May, 2022 4 commits
- Monkey-patch openmm.app.Topology.createDisulfideBonds instead of calling patch inside OpenMM · b5b429f9
  Milot Mirdita authored 3 years ago
  
  b5b429f9
- Speedup CLI first message shown a lot by not loading some imports at runtime and delaying others · 525b81c8
  Milot Mirdita authored 3 years ago
  
  525b81c8
- Log amber relaxation times · ad143885
  Milot Mirdita authored 3 years ago
  
  ad143885
- Include stereo_chemical_props.txt directly into the code base · 136bec63
  Milot Mirdita authored 3 years ago
  
  136bec63
10 May, 2022 2 commits
- Fix hhsearch database not being built · d09cdfa2
  Milot Mirdita authored 3 years ago
  
  d09cdfa2
- Don't run black on txt/md files · 186ecf51
  Milot Mirdita authored 3 years ago
  
  186ecf51
09 May, 2022 3 commits
- Fix wrong file passed to validate_and_fix_mmcif · 00d29778
  Milot Mirdita authored 3 years ago
  
  00d29778
- Display relaxed structures during prediction too · 3e33a929
  Milot Mirdita authored 3 years ago
  
  3e33a929
- Save structures during predictions · 5ba29fbd
  Milot Mirdita authored 3 years ago
  
  5ba29fbd
08 May, 2022 5 commits
- Explain that PDB files can be used for custom templates, fix typos · 18417d54
  Milot Mirdita authored 3 years ago
  
  18417d54
- Add link to original source for CFMMCIFIO · b2874158
  Milot Mirdita authored 3 years ago
  
  b2874158
- Add additional tests for validate_and_fix_mmcif · a18bf6eb
  Milot Mirdita authored 3 years ago
  
  a18bf6eb
- Make it clearer which code was copied from Bio.PDB.MMCIFIO · 14907c05
  Milot Mirdita authored 3 years ago
  
  14907c05
- Fix missing revision_date in .cif files for custom templates · f692d67e
  Milot Mirdita authored 3 years ago
  
  f692d67e