MMSeqsGPU support

* version of extended metrics, doesnt work because of tracing and dynamic conflict

* pairwise actifptm, iptm and chain-ptm calculation and plotting

* setting back poetry files to original

* updated version

* adding extended metrics calculation

* added command line arguments for actifptm

* import differently in colabdesign and colabfold

* fixed actifptm plot titles

* added actifptm

* added extended metrics to run function

* using/not using probabilities fixed

* working version of cull complex actifptm, with plots

* working actifptm, including for the whole complex

* actifptm with contacts not to crash without contacts between chains

* actifptm with contacts not to crash without contacts between chains

* removed unnecessary print

* small fixes

* fixes

* correct script for af2 ptm

* updated calculation of font sizes in figure

* actifptm doesnt crash with models without ptm

* not crashing with base af2 (no ptm) models, renamed extended to extra

* Update AlphaFold2.ipynb

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Co-authored-by: jvarga <julia.varga@cs.huji.ac.il>
Co-authored-by: Sergey O <kingsergey@gmail.com>

Adjust configuration to use PDB100 instead of PDB70 database

https://twitter.com/SDuninHorkawicz/status/1824704638173516040

* tensorflow-cpu -> tensorflow

* tf sys_platform and platform_machine

* add environmental pairing feature

* Refactor env pairing

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Co-authored-by: Milot Mirdita <milot@mirdita.de>