Commits · 9879f318e43de45ba58f7115bea867ad210115a2 · mos-service-deploy / colabfold2

09 Dec, 2021 3 commits
- Allow single sequence mode and uniref only · 9879f318
  konstin authored 3 years ago
  
  9879f318
- Update alphafold and other dependencies · c8ca1d6d
  konstin authored 3 years ago
  
  c8ca1d6d
- Remove useless file · 12c747b2
  konstin authored 3 years ago
  
  12c747b2
08 Dec, 2021 1 commit
- Update setup_databases.sh · b93680f6
  Martin Steinegger authored 3 years ago
  
  b93680f6
07 Dec, 2021 3 commits
- Fix template issue https://github.com/sokrypton/ColabFold/issues/118 · 33fcb9a7
  Martin Steinegger authored 3 years ago
  
  33fcb9a7
- Change rank_mode to rank_by in AlphaFold2_batch · 02ecc2f6
  Martin Steinegger authored 3 years ago
  
  02ecc2f6
- Create ISSUE_TEMPLATE.md · 133e6cfd
  Martin Steinegger authored 3 years ago
  
  133e6cfd
06 Dec, 2021 9 commits
- Evict cache · 6fa59297
  konstin authored 3 years ago
  
  6fa59297
- Make stop_at_score float for #119 · 916456c3
  konstin authored 3 years ago
  
  916456c3
- Update AlphaFold2.ipynb · 8d68d86b
  konstin authored 3 years ago
  
  8d68d86b
- Merge pull request #101 from konstin/main · 1b8f14dd
  konstin authored 3 years ago
```
Stop at score for recycles 
```
  1b8f14dd
- Fix ptmscore[key] · a02905bb
  konstin authored 3 years ago
  
  a02905bb
- gitignore pytestemp · dfd1ec79
  konstin authored 3 years ago
  
  dfd1ec79
- Add example for using scores.json · 62f2db14
  konstin authored 3 years ago
  
  62f2db14
- Merge branch 'upstream_main' into main · ecffca0e
  konstin authored 3 years ago
```
# Conflicts:
#	AlphaFold2.ipynb
#	colabfold/batch.py
#	tests/test_colabfold.py
```
  ecffca0e
- Write a scores file for each model and add basic scores json docs · c3fb81d3
  konstin authored 3 years ago
  
  c3fb81d3
04 Dec, 2021 5 commits
- Add pair_mode, clean up help text · 15bf1c06
  Martin Steinegger authored 3 years ago
  
  15bf1c06
- Link to localcolabfold · c63ad496
  konstin authored 3 years ago
  
  c63ad496
- One more test timing replacement · 4f9b9127
  konstin authored 3 years ago
  
  4f9b9127
- Fix test timing mock · 0913efb0
  konstin authored 3 years ago
  
  0913efb0
- Add ptm score to scores json · 2b1b2c57
  konstin authored 3 years ago
  
  2b1b2c57
03 Dec, 2021 11 commits
- Change pip repository path to sokrypton · c0790963
  Martin Steinegger authored 3 years ago
  
  c0790963
- Let pip install point to sokrypton colabfold repository · a81c45d5
  Martin Steinegger authored 3 years ago
  
  a81c45d5
- Rehash if hash was already used · 891f484e
  Martin Steinegger authored 3 years ago
  
  891f484e
- Merge branch 'main' into main · ec23acdf
  konstin authored 3 years ago
  
  ec23acdf
- Merge branch 'main' of https://github.com/konstin/ColabFold · cac0410d
  Martin Steinegger authored 3 years ago
  
  cac0410d
- Rename output file to _rank_[1-5]_model_[1-5] · ca493dc8
  Martin Steinegger authored 3 years ago
  
  ca493dc8
- Call callback to plot structures on the fly · e9e317ed
  Martin Steinegger authored 3 years ago
  
  e9e317ed
- Add prediction_callback · 140887be
  Martin Steinegger authored 3 years ago
  
  140887be
- Add prediction call back · c6df239a
  Martin Steinegger authored 3 years ago
  
  c6df239a
- Fix timer issue https://github.com/sokrypton/ColabFold/issues/114 · ad0be3a8
  Martin Steinegger authored 3 years ago
  
  ad0be3a8
- Fix null byte issue in a3m https://github.com/sokrypton/ColabFold/issues/113 · 4ce08e47
  Martin Steinegger authored 3 years ago
  
  4ce08e47
02 Dec, 2021 8 commits
- Run black · 4d86d37a
  Martin Steinegger authored 3 years ago
  
  4d86d37a
- Merge branch 'main' of https://github.com/sokrypton/ColabFold · 2169e476
  Martin Steinegger authored 3 years ago
  
  2169e476
- Remove null bytes from input a3m string · 87d6aabf
  Martin Steinegger authored 3 years ago
  
  87d6aabf
- Merge pull request #110 from konstin/pae_data · 1c51fe37
  konstin authored 3 years ago
```
Write two kinds of json output
```
  1c51fe37
- Support multimer with only paired features · ab0dad91
  Martin Steinegger authored 3 years ago
  
  ab0dad91
- Run black · 8a2a6081
  Martin Steinegger authored 3 years ago
  
  8a2a6081
- Allow paired only MSA mode for AlphaFold2-multimer · e32a7f51
  Martin Steinegger authored 3 years ago
  
  e32a7f51
- Merge pull request #111 from EnzoAndree/main · 4bdcb9f1
  konstin authored 3 years ago
```
Support .faa extension
```
  4bdcb9f1